Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01357.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 418

Length: 698
ACGTcount: A:0.29, C:0.31, G:0.16, T:0.25


Found at i:110 original size:54 final size:51

Alignment explanation


    Indices: 51--168  Score: 193
    Period size: 51  Copynumber: 2.3  Consensus size: 51

         41 TCCAGTTCCA

                                                                
         51 GCACCACCACCCAAGGGTCCCACTCCTCAGTATAAGCCCCCAAGTTCT-TCT
          1 GCACCACCACCCAAGGGTCCCACTCCTCAGTATAAGCCCCCAAGTTCTCT-T

                                        *                      
        102 GCACCACCACCCAAGGGTCCCACTCCTCTGTATAAGCCCCCAAGTTCTCTT
          1 GCACCACCACCCAAGGGTCCCACTCCTCAGTATAAGCCCCCAAGTTCTCTT

              *        *    
        153 GCTCCACCACCTAAGG
          1 GCACCACCACCCAAGG

        169 CAGCCACTCC


Statistics
Matches: 63,  Mismatches: 3, Indels: 2
        0.93            0.04        0.03

Matches are distributed among these distances:
  51   62  0.98
  52    1  0.02

ACGTcount: A:0.23, C:0.43, G:0.14, T:0.19


Consensus pattern (51 bp):   
GCACCACCACCCAAGGGTCCCACTCCTCAGTATAAGCCCCCAAGTTCTCTT

Found at i:187 original size:51 final size:51

Alignment explanation


    Indices: 51--194  Score: 157
    Period size: 51  Copynumber: 2.8  Consensus size: 51

         41 TCCAGTTCCA

                            **        * *                      
         51 GCACCACCACCCAAGGGTCCCACTCCTCAGTATAAGCCCCCAAGTTCTTCT
          1 GCACCACCACCCAAGGCACCCACTCCCCTGTATAAGCCCCCAAGTTCTTCT

                            **        *                         
        102 GCACCACCACCCAAGGGTCCCACTCCTCTGTATAAGCCCCCAAGTTC-TCTT
          1 GCACCACCACCCAAGGCACCCACTCCCCTGTATAAGCCCCCAAGTTCTTC-T

              *        *      *                 *      
        153 GCTCCACCACCTAAGGCAGCCACTCCCCCT-TATAAACCCCCA
          1 GCACCACCACCCAAGGCACCCACT-CCCCTGTATAAGCCCCCA

        195 GCTCCTGCAC


Statistics
Matches: 83,  Mismatches: 8, Indels: 4
        0.87            0.08        0.04

Matches are distributed among these distances:
  50    2  0.02
  51   77  0.93
  52    4  0.05

ACGTcount: A:0.24, C:0.45, G:0.12, T:0.19


Consensus pattern (51 bp):   
GCACCACCACCCAAGGCACCCACTCCCCTGTATAAGCCCCCAAGTTCTTCT
Done.