Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00891.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5138
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30


Found at i:3486 original size:18 final size:18

Alignment explanation


    Indices: 3463--3501  Score: 69
    Period size: 18  Copynumber: 2.2  Consensus size: 18

       3453 TTTGCATGCA

                     *        
       3463 ATGAATGCGTATATGACT
          1 ATGAATGCGCATATGACT

                              
       3481 ATGAATGCGCATATGACT
          1 ATGAATGCGCATATGACT

               
       3499 ATG
          1 ATG

       3502 TCTGAGGATG


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  18   20  1.00

ACGTcount: A:0.33, C:0.13, G:0.23, T:0.31


Consensus pattern (18 bp):   
ATGAATGCGCATATGACT
Done.