Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01378.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 342

Length: 571
ACGTcount: A:0.36, C:0.15, G:0.21, T:0.28


Found at i:492 original size:19 final size:18

Alignment explanation


    Indices: 431--493  Score: 56
    Period size: 19  Copynumber: 3.2  Consensus size: 18

        421 TGGGTTACAA

                              
        431 GTATTTACAACTTAGTTT
          1 GTATTTACAACTTAGTTT

            *                      
        449 TTATTTTCATCAACTTA-TTGCT
          1 GTA-TTT-A-CAACTTAGTT--T

                               
        471 GTATTTACAACTTTAGTTT
          1 GTATTTACAAC-TTAGTTT

                
        490 GTAT
          1 GTAT

        494 ATTCTTTTAG


Statistics
Matches: 36,  Mismatches: 2, Indels: 13
        0.71            0.04        0.25

Matches are distributed among these distances:
  18    2  0.06
  19   12  0.33
  20    7  0.19
  21   12  0.33
  22    3  0.08

ACGTcount: A:0.25, C:0.13, G:0.10, T:0.52


Consensus pattern (18 bp):   
GTATTTACAACTTAGTTT
Done.