Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01381.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1815
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36


Found at i:1127 original size:6 final size:6

Alignment explanation


    Indices: 1116--1143  Score: 56
    Period size: 6  Copynumber: 4.7  Consensus size: 6

       1106 TAGGATATTA

                                            
       1116 AAAAAG AAAAAG AAAAAG AAAAAG AAAA
          1 AAAAAG AAAAAG AAAAAG AAAAAG AAAA

       1144 CAATCACTAT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   22  1.00

ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00


Consensus pattern (6 bp):   
AAAAAG

Found at i:1314 original size:18 final size:18

Alignment explanation


    Indices: 1291--1328  Score: 76
    Period size: 18  Copynumber: 2.1  Consensus size: 18

       1281 AACCTAAATG

                              
       1291 GTAATTTATTGGTTGATT
          1 GTAATTTATTGGTTGATT

                              
       1309 GTAATTTATTGGTTGATT
          1 GTAATTTATTGGTTGATT

              
       1327 GT
          1 GT

       1329 TTATTTTATT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   20  1.00

ACGTcount: A:0.21, C:0.00, G:0.24, T:0.55


Consensus pattern (18 bp):   
GTAATTTATTGGTTGATT
Done.