Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01384.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 784

Length: 1307
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33


Found at i:1174 original size:23 final size:24

Alignment explanation


    Indices: 1148--1203  Score: 62
    Period size: 23  Copynumber: 2.4  Consensus size: 24

       1138 TGCTTTAGGC

                                    
       1148 TTGTGTTTTCATTTA-TTTTATTT
          1 TTGTGTTTTCATTTACTTTTATTT

                     **         *   
       1171 TTGT-TTTTGTTTTACTTTTTTTT
          1 TTGTGTTTTCATTTACTTTTATTT

                      
       1194 TTGTAGTTTT
          1 TTGT-GTTTT

       1204 TAGTGGTGTA


Statistics
Matches: 27,  Mismatches: 3, Indels: 4
        0.79            0.09        0.12

Matches are distributed among these distances:
  22    8  0.30
  23   15  0.56
  25    4  0.15

ACGTcount: A:0.09, C:0.04, G:0.11, T:0.77


Consensus pattern (24 bp):   
TTGTGTTTTCATTTACTTTTATTT

Found at i:1189 original size:17 final size:17

Alignment explanation


    Indices: 1163--1197  Score: 52
    Period size: 17  Copynumber: 2.1  Consensus size: 17

       1153 TTTTCATTTA

                 *           
       1163 TTTTATTTTTGTTTTTG
          1 TTTTACTTTTGTTTTTG

                      *      
       1180 TTTTACTTTTTTTTTTG
          1 TTTTACTTTTGTTTTTG

             
       1197 T
          1 T

       1198 AGTTTTTAGT


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.06, C:0.03, G:0.09, T:0.83


Consensus pattern (17 bp):   
TTTTACTTTTGTTTTTG
Done.