Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01386.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5308
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32


Found at i:150 original size:69 final size:69

Alignment explanation


    Indices: 35--173  Score: 215
    Period size: 69  Copynumber: 2.0  Consensus size: 69

         25 TCAGATCTGC

                               *   *                 *                 *     
         35 AACCTTCAAAGTGAAGAAGTCTCTGCAAAGATCGATGAAGCCTATCACAGTGAAGGAAAGAGGTG
          1 AACCTTCAAAGTGAAGAAGGCTCGGCAAAGATCGATGAAGCATATCACAGTGAAGGAAAAAGGTG

                
        100 GATT
         66 GATT

                          *                 *              *                 
        104 AACCTTCAAAGTGATGAAGGCTCGGCAAAGATTGATGAAGCATATCAGAGTGAAGGAAAAAGGTG
          1 AACCTTCAAAGTGAAGAAGGCTCGGCAAAGATCGATGAAGCATATCACAGTGAAGGAAAAAGGTG

                
        169 GATT
         66 GATT

             
        173 A
          1 A

        174 CCAGGAGCCG


Statistics
Matches: 63,  Mismatches: 7, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  69   63  1.00

ACGTcount: A:0.39, C:0.14, G:0.27, T:0.20


Consensus pattern (69 bp):   
AACCTTCAAAGTGAAGAAGGCTCGGCAAAGATCGATGAAGCATATCACAGTGAAGGAAAAAGGTG
GATT

Found at i:3984 original size:31 final size:31

Alignment explanation


    Indices: 3949--4012  Score: 128
    Period size: 31  Copynumber: 2.1  Consensus size: 31

       3939 GAATCCTAAG

                                           
       3949 TATGTACTACATAAACAACAGGATAAGTTGC
          1 TATGTACTACATAAACAACAGGATAAGTTGC

                                           
       3980 TATGTACTACATAAACAACAGGATAAGTTGC
          1 TATGTACTACATAAACAACAGGATAAGTTGC

              
       4011 TA
          1 TA

       4013 GCATCTTGGT


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  31   33  1.00

ACGTcount: A:0.42, C:0.16, G:0.16, T:0.27


Consensus pattern (31 bp):   
TATGTACTACATAAACAACAGGATAAGTTGC
Done.