Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01401.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 709

Length: 1183
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31


Found at i:862 original size:39 final size:39

Alignment explanation


    Indices: 819--898  Score: 160
    Period size: 39  Copynumber: 2.1  Consensus size: 39

        809 AGACCTCCCA

                                                   
        819 TGCACTAAACCTGACCAAGTAGTTCAAGTAGAGGGATTT
          1 TGCACTAAACCTGACCAAGTAGTTCAAGTAGAGGGATTT

                                                   
        858 TGCACTAAACCTGACCAAGTAGTTCAAGTAGAGGGATTT
          1 TGCACTAAACCTGACCAAGTAGTTCAAGTAGAGGGATTT

              
        897 TG
          1 TG

        899 TTATCTGTTG


Statistics
Matches: 41,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  39   41  1.00

ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26


Consensus pattern (39 bp):   
TGCACTAAACCTGACCAAGTAGTTCAAGTAGAGGGATTT
Done.