Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01411.N4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2778
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33


Found at i:2079 original size:20 final size:20

Alignment explanation


    Indices: 2050--2091  Score: 59
    Period size: 20  Copynumber: 2.1  Consensus size: 20

       2040 GTCCCTTGTA

                                 
       2050 ACTCAAAA-TTTACAGTTTTG
          1 ACTCAAAATTTTACA-TTTTG

                 *              
       2070 ACTCAGAATTTTACATTTTG
          1 ACTCAAAATTTTACATTTTG

              
       2090 AC
          1 AC

       2092 CAGTTTAGTC


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  20   14  0.70
  21    6  0.30

ACGTcount: A:0.33, C:0.17, G:0.10, T:0.40


Consensus pattern (20 bp):   
ACTCAAAATTTTACATTTTG

Done.