Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01412.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 853

Length: 1423
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.28


Found at i:192 original size:20 final size:20

Alignment explanation


    Indices: 167--205  Score: 69
    Period size: 20  Copynumber: 1.9  Consensus size: 20

        157 TTTAAAATTC

                   *            
        167 ATTTTTAGCCTTTTTCTTTA
          1 ATTTTTACCCTTTTTCTTTA

                               
        187 ATTTTTACCCTTTTTCTTT
          1 ATTTTTACCCTTTTTCTTT

        206 TTTGTTTGGT


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  20   18  1.00

ACGTcount: A:0.13, C:0.18, G:0.03, T:0.67


Consensus pattern (20 bp):   
ATTTTTACCCTTTTTCTTTA

Done.