Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00896.C3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4008
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30


Found at i:2238 original size:51 final size:51

Alignment explanation


    Indices: 2140--2238  Score: 112
    Period size: 51  Copynumber: 1.9  Consensus size: 51

       2130 TAGAAGACGC

                      *     *  *                 *   *         
       2140 TGATTGTAAGGAGCCTGCATCATCAAAAGATGAAAAGGATGGGGATGCAAG
          1 TGATTGTAAGAAGCCTCCACCATCAAAAGATGAAAAGAATGAGGATGCAAG

                                                        *     
       2191 TGATTGTAAGAAGCCTCCACCATCAGAAA-ATGGAAAA-AATGATGATGC
          1 TGATTGTAAGAAGCCTCCACCATCA-AAAGAT-GAAAAGAATGAGGATGC

       2239 TGATGATGCC


Statistics
Matches: 40,  Mismatches: 6, Indels: 4
        0.80            0.12        0.08

Matches are distributed among these distances:
  51   32  0.80
  52    8  0.20

ACGTcount: A:0.39, C:0.14, G:0.26, T:0.20


Consensus pattern (51 bp):   
TGATTGTAAGAAGCCTCCACCATCAAAAGATGAAAAGAATGAGGATGCAAG
Done.