Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00081.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 626

Length: 1044
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.29


Found at i:724 original size:21 final size:21

Alignment explanation


    Indices: 655--752  Score: 97
    Period size: 21  Copynumber: 4.7  Consensus size: 21

        645 TCCTTCATCT

                       *        *
        655 GCATACCCTCCTCCACCTTCG
          1 GCATACCCTCCACCACCTTCC

              *  *     ** * *   *
        676 GCTTATCCTCCGTCGCATTCA
          1 GCATACCCTCCACCACCTTCC

              *                  
        697 GCTTACCCTCCACCACCTTCC
          1 GCATACCCTCCACCACCTTCC

                                 
        718 GCATACCCTCCACCACCTTCC
          1 GCATACCCTCCACCACCTTCC

            *             
        739 ACATACCCTCCACC
          1 GCATACCCTCCACC

        753 TCCGCCACAT


Statistics
Matches: 62,  Mismatches: 15, Indels: 0
        0.81            0.19        0.00

Matches are distributed among these distances:
  21   62  1.00

ACGTcount: A:0.17, C:0.52, G:0.07, T:0.23


Consensus pattern (21 bp):   
GCATACCCTCCACCACCTTCC

Found at i:928 original size:25 final size:25

Alignment explanation


    Indices: 894--943  Score: 82
    Period size: 25  Copynumber: 2.0  Consensus size: 25

        884 CCAAGGGTTT

                           *         
        894 CACATGTCAACCAAATGCAAAAATG
          1 CACATGTCAACCAAAAGCAAAAATG

                              *      
        919 CACATGTCAACCAAAAGCTAAAATG
          1 CACATGTCAACCAAAAGCAAAAATG

        944 AGAAGTATTT


Statistics
Matches: 23,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  25   23  1.00

ACGTcount: A:0.48, C:0.24, G:0.12, T:0.16


Consensus pattern (25 bp):   
CACATGTCAACCAAAAGCAAAAATG
Done.