Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga04g01429.N1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 769
Length: 1283
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Found at i:804 original size:133 final size:133
Alignment explanation
Indices: 578--1062 Score: 774
Period size: 133 Copynumber: 3.6 Consensus size: 133
568 GATCTGCTGT
* *
578 AATTTGATCTGCTTTACTCCTGCTCAGTAAAGATAAGATCTGGTATGTTTAGCCTGCTCCACTCC
1 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGTA--TTTAGCCTGCTCCACTCC
*
643 TGCTTAGTGAAGATAAGGCTGGTGGCTGAAATCTGCTCCATTGCCGATACATGGAGATAAGA-TT
64 TGCTCAGTGAAGATAAGGCTGGTGGCTGAAATCTGCTCCATTGCCGATACATGGAGATAAGACTT
*
707 CACCAA
129 -GCCAA
* * * * * * *
713 AATTTGATCTGCTCCGCTCCTGCTCTGCGAAGATAAGATCTAGTATATAGCCTGCTCCACTTCTG
1 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGTATTTAGCCTGCTCCACTCCTG
* *
778 CTCAGTGAAGATAAGGCTGGTAGCTGAAATCTGCTCCATTGCCGATACATAGAGATAAGACTTGC
66 CTCAGTGAAGATAAGGCTGGTGGCTGAAATCTGCTCCATTGCCGATACATGGAGATAAGACTTGC
843 CAA
131 CAA
* * *
846 AATTTGATCTGCTTCACTTCTGTTCAGTGAAGATAAGATCTGGTATTTAGCCTGCTTCACTCCTG
1 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGTATTTAGCCTGCTCCACTCCTG
911 CTCAGTGAAGATAAGGCTGGTGGCTGAAATCTGCTCCATTGCCGATACATGGAGATAAGACTTGC
66 CTCAGTGAAGATAAGGCTGGTGGCTGAAATCTGCTCCATTGCCGATACATGGAGATAAGACTTGC
976 CAA
131 CAA
* *
979 AATTTGATCTGCTTCACTTCTGCTCAGTGAAGATAAGATCTGGTATTTAGCCTGCTCCACTCCTA
1 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGTATTTAGCCTGCTCCACTCCTG
1044 CTCAGTGAAGATAAGGCTG
66 CTCAGTGAAGATAAGGCTG
1063 ATGATATCTG
Statistics
Matches: 321, Mismatches: 28, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
133 281 0.88
134 2 0.01
135 38 0.12
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.30
Consensus pattern (133 bp):
AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGTATTTAGCCTGCTCCACTCCTG
CTCAGTGAAGATAAGGCTGGTGGCTGAAATCTGCTCCATTGCCGATACATGGAGATAAGACTTGC
CAA
Done.