Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01454.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 956

Length: 1594
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.31


Found at i:1536 original size:20 final size:19

Alignment explanation


    Indices: 1504--1541  Score: 58
    Period size: 20  Copynumber: 1.9  Consensus size: 19

       1494 GAAAGGAAAC

                    *          
       1504 AATGTCATCAATGTACAGA
          1 AATGTCATAAATGTACAGA

                               
       1523 AATGATCATAAATGTACAG
          1 AATG-TCATAAATGTACAG

       1542 TGCAATGGCA


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  19    4  0.24
  20   13  0.76

ACGTcount: A:0.45, C:0.13, G:0.16, T:0.26


Consensus pattern (19 bp):   
AATGTCATAAATGTACAGA
Done.