Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01459.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7613
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33


Found at i:7067 original size:19 final size:19

Alignment explanation


    Indices: 7043--7084  Score: 59
    Period size: 19  Copynumber: 2.2  Consensus size: 19

       7033 ACTATTTTGC

                                
       7043 ATAAGT-TGTAAAATAGTTG
          1 ATAAGTATGTAAAATAG-TG

                      *        
       7062 ATAAGTATGTGAAATAGTG
          1 ATAAGTATGTAAAATAGTG

                
       7081 ATAA
          1 ATAA

       7085 TTTGAAGTTG


Statistics
Matches: 21,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  19   12  0.57
  20    9  0.43

ACGTcount: A:0.45, C:0.00, G:0.21, T:0.33


Consensus pattern (19 bp):   
ATAAGTATGTAAAATAGTG

Found at i:7199 original size:30 final size:30

Alignment explanation


    Indices: 7165--7222  Score: 98
    Period size: 30  Copynumber: 1.9  Consensus size: 30

       7155 TTTTTGGGCA

                  *              *        
       7165 TAGGGGTAAAATGGTCATTTTGCCAAAGTC
          1 TAGGGGCAAAATGGTCATTTTACCAAAGTC

                                        
       7195 TAGGGGCAAAATGGTCATTTTACCAAAG
          1 TAGGGGCAAAATGGTCATTTTACCAAAG

       7223 ATGTAAATTT


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  30   26  1.00

ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28


Consensus pattern (30 bp):   
TAGGGGCAAAATGGTCATTTTACCAAAGTC
Done.