Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01480.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 582

Length: 970
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29


Found at i:332 original size:18 final size:18

Alignment explanation


    Indices: 298--334  Score: 56
    Period size: 18  Copynumber: 2.1  Consensus size: 18

        288 GGAAACTGGG

                      * *     
        298 AATGAAGAGGGAGCTGAA
          1 AATGAAGAGGAACCTGAA

                              
        316 AATGAAGAGGAACCTGAA
          1 AATGAAGAGGAACCTGAA

             
        334 A
          1 A

        335 CTGATGATGG


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.49, C:0.08, G:0.32, T:0.11


Consensus pattern (18 bp):   
AATGAAGAGGAACCTGAA
Done.