Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01488.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4236
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34


Found at i:2105 original size:15 final size:15

Alignment explanation


    Indices: 2076--2121  Score: 56
    Period size: 15  Copynumber: 3.0  Consensus size: 15

       2066 GAAATGAATG

                  *         
       2076 AAGTTTTGCTCAATTT
          1 AAGTTTGGCT-AATTT

                          *
       2092 AAGTTTGGCTAATTC
          1 AAGTTTGGCTAATTT

                    *      
       2107 AAGTTTGGTTAATTT
          1 AAGTTTGGCTAATTT

       2122 TGGTCCAAAT


Statistics
Matches: 26,  Mismatches: 4, Indels: 1
        0.84            0.13        0.03

Matches are distributed among these distances:
  15   17  0.65
  16    9  0.35

ACGTcount: A:0.26, C:0.09, G:0.17, T:0.48


Consensus pattern (15 bp):   
AAGTTTGGCTAATTT
Done.