Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01489.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2873
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34


Found at i:2572 original size:64 final size:63

Alignment explanation


    Indices: 2470--2588  Score: 211
    Period size: 64  Copynumber: 1.9  Consensus size: 63

       2460 TTTACTAATA

                                             *                              
       2470 CTAAAACTGCAGTTAGTCTTCACAGCAACATACGTACGAAAAAGTGTCTGGCAACCCAACCTAT
          1 CTAAAACTGCAGTTAGTCTTCACAGCAACATACATACG-AAAAGTGTCTGGCAACCCAACCTAT

                  *                                                
       2534 CTAAAAGTGCAGTTAGTCTTCACAGCAACATACATACGAAAAGTGTCTGGCAACC
          1 CTAAAACTGCAGTTAGTCTTCACAGCAACATACATACGAAAAGTGTCTGGCAACC

       2589 ACCACCGATA


Statistics
Matches: 53,  Mismatches: 2, Indels: 1
        0.95            0.04        0.02

Matches are distributed among these distances:
  63   17  0.32
  64   36  0.68

ACGTcount: A:0.36, C:0.25, G:0.17, T:0.22


Consensus pattern (63 bp):   
CTAAAACTGCAGTTAGTCTTCACAGCAACATACATACGAAAAGTGTCTGGCAACCCAACCTAT
Done.