Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01490.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2854
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27


Found at i:130 original size:6 final size:6

Alignment explanation


    Indices: 121--191  Score: 108
    Period size: 6  Copynumber: 11.8  Consensus size: 6

        111 TGATGCTAAT

                                         *                         *
        121 GCTGAA GCTGAA GCTGAA GCT-AA TTCTGAA GCTGAA GCTGAA GCTGAT
          1 GCTGAA GCTGAA GCTGAA GCTGAA -GCTGAA GCTGAA GCTGAA GCTGAA

                                      
        169 GCTGAA GCTGAA GCTGAA GCTGA
          1 GCTGAA GCTGAA GCTGAA GCTGA

        192 TGCTAATGCT


Statistics
Matches: 59,  Mismatches: 4, Indels: 4
        0.88            0.06        0.06

Matches are distributed among these distances:
   5    2  0.03
   6   55  0.93
   7    2  0.03

ACGTcount: A:0.31, C:0.17, G:0.31, T:0.21


Consensus pattern (6 bp):   
GCTGAA

Found at i:142 original size:24 final size:24

Alignment explanation


    Indices: 115--211  Score: 135
    Period size: 24  Copynumber: 4.0  Consensus size: 24

        105 TGATGGTGAT

                                    
        115 GCTAATGCTGAAGCTGAAGCTGAA
          1 GCTAATGCTGAAGCTGAAGCTGAA

                  *                 
        139 GCTAATTCTGAAGCTGAAGCTGAA
          1 GCTAATGCTGAAGCTGAAGCTGAA

               *                    
        163 GCTGATGCTGAAGCTGAAGCTGAA
          1 GCTAATGCTGAAGCTGAAGCTGAA

               *                      
        187 GCTGATGCT-AATGCT-AATGCTGAA
          1 GCTAATGCTGAA-GCTGAA-GCTGAA

             
        211 G
          1 G

        212 ATAAACCAAT


Statistics
Matches: 68,  Mismatches: 3, Indels: 4
        0.91            0.04        0.05

Matches are distributed among these distances:
  23    4  0.06
  24   64  0.94

ACGTcount: A:0.31, C:0.16, G:0.29, T:0.24


Consensus pattern (24 bp):   
GCTAATGCTGAAGCTGAAGCTGAA
Done.