Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01501.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1895
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31


Found at i:1342 original size:19 final size:19

Alignment explanation


    Indices: 1318--1356  Score: 78
    Period size: 19  Copynumber: 2.1  Consensus size: 19

       1308 CCTGTCTCTC

                               
       1318 CCCCTTTAATGTATTAGAG
          1 CCCCTTTAATGTATTAGAG

                               
       1337 CCCCTTTAATGTATTAGAG
          1 CCCCTTTAATGTATTAGAG

             
       1356 C
          1 C

       1357 TAAAATAGAT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   20  1.00

ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36


Consensus pattern (19 bp):   
CCCCTTTAATGTATTAGAG
Done.