Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01517.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4041
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33


Found at i:85 original size:6 final size:6

Alignment explanation


    Indices: 76--118  Score: 68
    Period size: 6  Copynumber: 7.2  Consensus size: 6

         66 GTCGCCGCCA

                 *         *                                  
         76 GCAGCA GCAGCG GTAGCG GCAGCG GCAGCG GCAGCG GCAGCG G
          1 GCAGCG GCAGCG GCAGCG GCAGCG GCAGCG GCAGCG GCAGCG G

        119 GCGGAGGAGG


Statistics
Matches: 34,  Mismatches: 3, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   6   34  1.00

ACGTcount: A:0.19, C:0.30, G:0.49, T:0.02


Consensus pattern (6 bp):   
GCAGCG

Done.