Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01523.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2271
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.29


Found at i:2003 original size:17 final size:18

Alignment explanation


    Indices: 1970--2003  Score: 52
    Period size: 17  Copynumber: 1.9  Consensus size: 18

       1960 GAAACTCCTC

                      *       
       1970 AAGAAACAGGCTGAAGGG
          1 AAGAAACAGGATGAAGGG

                             
       1988 AAGAAA-AGGATGAAGG
          1 AAGAAACAGGATGAAGG

       2004 CAATAGGTAA


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  17    9  0.60
  18    6  0.40

ACGTcount: A:0.50, C:0.06, G:0.38, T:0.06


Consensus pattern (18 bp):   
AAGAAACAGGATGAAGGG
Done.