Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01534.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1763
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30


Found at i:1664 original size:2 final size:2

Alignment explanation


    Indices: 1657--1694  Score: 53
    Period size: 2  Copynumber: 19.5  Consensus size: 2

       1647 GACATAGAGT

                                                                       
       1657 TA TA TA TA TA TA TA TA TA T- TCA -A TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA T

       1695 TCAAATGATT


Statistics
Matches: 33,  Mismatches: 0, Indels: 6
        0.85            0.00        0.15

Matches are distributed among these distances:
   1    2  0.06
   2   31  0.94

ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Found at i:1684 original size:19 final size:19

Alignment explanation


    Indices: 1660--1698  Score: 78
    Period size: 19  Copynumber: 2.1  Consensus size: 19

       1650 ATAGAGTTAT

                               
       1660 ATATATATATATATATTCA
          1 ATATATATATATATATTCA

                               
       1679 ATATATATATATATATTCA
          1 ATATATATATATATATTCA

             
       1698 A
          1 A

       1699 ATGATTGCAG


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   20  1.00

ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46


Consensus pattern (19 bp):   
ATATATATATATATATTCA
Done.