Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01545.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2015
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.30


Found at i:390 original size:39 final size:39

Alignment explanation


    Indices: 336--414  Score: 158
    Period size: 39  Copynumber: 2.0  Consensus size: 39

        326 TACTTTCATA

                                                   
        336 AATACGTATATAGCTTGCTTTAGAGAGAGAGAAAGAGAG
          1 AATACGTATATAGCTTGCTTTAGAGAGAGAGAAAGAGAG

                                                   
        375 AATACGTATATAGCTTGCTTTAGAGAGAGAGAAAGAGAG
          1 AATACGTATATAGCTTGCTTTAGAGAGAGAGAAAGAGAG

             
        414 A
          1 A

        415 GAGAGAGAGA


Statistics
Matches: 40,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  39   40  1.00

ACGTcount: A:0.42, C:0.08, G:0.28, T:0.23


Consensus pattern (39 bp):   
AATACGTATATAGCTTGCTTTAGAGAGAGAGAAAGAGAG

Found at i:401 original size:2 final size:2

Alignment explanation


    Indices: 396--426  Score: 53
    Period size: 2  Copynumber: 15.5  Consensus size: 2

        386 AGCTTGCTTT

                            *                             
        396 AG AG AG AG AG AA AG AG AG AG AG AG AG AG AG A
          1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A

        427 TTTCTACTAA


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   2   27  1.00

ACGTcount: A:0.55, C:0.00, G:0.45, T:0.00


Consensus pattern (2 bp):   
AG

Done.