Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01558.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2426
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.34


Found at i:520 original size:16 final size:18

Alignment explanation


    Indices: 499--535  Score: 51
    Period size: 16  Copynumber: 2.2  Consensus size: 18

        489 TTAAAATATG

                              
        499 AAAAAATAAT-TT-TTTT
          1 AAAAAATAATGTTCTTTT

                   *          
        515 AAAAAATTATGTTCTTTT
          1 AAAAAATAATGTTCTTTT

               
        533 AAA
          1 AAA

        536 GGTAAAGATT


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  16    9  0.50
  17    2  0.11
  18    7  0.39

ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46


Consensus pattern (18 bp):   
AAAAAATAATGTTCTTTT
Done.