Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01577.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 384

Length: 641
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32


Found at i:328 original size:4 final size:4

Alignment explanation


    Indices: 319--344  Score: 52
    Period size: 4  Copynumber: 6.5  Consensus size: 4

        309 CCTACAAGTT

                                            
        319 ATGC ATGC ATGC ATGC ATGC ATGC AT
          1 ATGC ATGC ATGC ATGC ATGC ATGC AT

        345 CTCATATATA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   22  1.00

ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27


Consensus pattern (4 bp):   
ATGC

Done.