Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01586.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3894
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33


Found at i:618 original size:36 final size:36

Alignment explanation


    Indices: 571--642  Score: 144
    Period size: 36  Copynumber: 2.0  Consensus size: 36

        561 GGATTGGCTC

                                                
        571 ATCATTGACTGTTTATGCTTAAAAAAAGGTCATTTG
          1 ATCATTGACTGTTTATGCTTAAAAAAAGGTCATTTG

                                                
        607 ATCATTGACTGTTTATGCTTAAAAAAAGGTCATTTG
          1 ATCATTGACTGTTTATGCTTAAAAAAAGGTCATTTG

        643 TCCAGTTCCC


Statistics
Matches: 36,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  36   36  1.00

ACGTcount: A:0.33, C:0.11, G:0.17, T:0.39


Consensus pattern (36 bp):   
ATCATTGACTGTTTATGCTTAAAAAAAGGTCATTTG
Done.