Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01601.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 692

Length: 1154
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.34


Found at i:416 original size:6 final size:6

Alignment explanation


    Indices: 407--500  Score: 59
    Period size: 6  Copynumber: 15.7  Consensus size: 6

        397 TTTCTCTTTC

                          *    * *    *          *               *  
        407 TCTTCT TCTTCT CCTTCA CCTTCC TCTTCT TCCTCT AT-TTCT TCTGCT
          1 TCTTCT TCTTCT TCTTCT TCTTCT TCTTCT TCTTCT -TCTTCT TCTTCT

                     *    *             *                          
        455 TCTTCT TCATCT GCTTCT TCTTCT GCTT-T GTC-TCT CTCTTCT TCTT
          1 TCTTCT TCTTCT TCTTCT TCTTCT TCTTCT -TCTTCT -TCTTCT TCTT

        501 TCTCCATGCC


Statistics
Matches: 67,  Mismatches: 16, Indels: 10
        0.72            0.17        0.11

Matches are distributed among these distances:
   5    3  0.04
   6   60  0.90
   7    4  0.06

ACGTcount: A:0.03, C:0.36, G:0.04, T:0.56


Consensus pattern (6 bp):   
TCTTCT

Found at i:467 original size:15 final size:15

Alignment explanation


    Indices: 449--477  Score: 58
    Period size: 15  Copynumber: 1.9  Consensus size: 15

        439 CTCTATTTCT

                           
        449 TCTGCTTCTTCTTCA
          1 TCTGCTTCTTCTTCA

                          
        464 TCTGCTTCTTCTTC
          1 TCTGCTTCTTCTTC

        478 TGCTTTGTCT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.03, C:0.34, G:0.07, T:0.55


Consensus pattern (15 bp):   
TCTGCTTCTTCTTCA
Done.