Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01616.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2311
ACGTcount: A:0.23, C:0.18, G:0.14, T:0.45


Found at i:1156 original size:68 final size:68

Alignment explanation


    Indices: 1083--1248  Score: 199
    Period size: 67  Copynumber: 2.5  Consensus size: 68

       1073 ACCTCAACTC

                                                                 *      **   
       1083 TCATGTTATTTTTGGATGCAACTACCATGTTGATTATGGGTCTCATATATATGGAGCTTCGGCTC
          1 TCATGTTATTTTTGGATGCAACTACCATGTTGATTATGGGTCTCATATATATGAAGCTTCAACTC

             * 
       1148 TTT
         66 TCT

                         **   *  *   *         *              *    *         
       1151 TCATGTTATTTTTCAAT-TAATTACTATGTTGATTTTGGGTCTCATATATGTGAATCTTCAACTC
          1 TCATGTTATTTTTGGATGCAACTACCATGTTGATTATGGGTCTCATATATATGAAGCTTCAACTC

               
       1215 TCT
         66 TCT

                   *                *      
       1218 TCATGTTGTTTTTGGATGCAACTATCATGTT
          1 TCATGTTATTTTTGGATGCAACTACCATGTT

       1249 AATTGTAAGT


Statistics
Matches: 78,  Mismatches: 19, Indels: 2
        0.79            0.19        0.02

Matches are distributed among these distances:
  67   54  0.69
  68   24  0.31

ACGTcount: A:0.22, C:0.15, G:0.17, T:0.46


Consensus pattern (68 bp):   
TCATGTTATTTTTGGATGCAACTACCATGTTGATTATGGGTCTCATATATATGAAGCTTCAACTC
TCT
Done.