Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01622.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2235
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31


Found at i:1214 original size:7 final size:7

Alignment explanation


    Indices: 1202--1229  Score: 56
    Period size: 7  Copynumber: 4.0  Consensus size: 7

       1192 AACACTATAT

                   
       1202 GCAAAAG
          1 GCAAAAG

                   
       1209 GCAAAAG
          1 GCAAAAG

                   
       1216 GCAAAAG
          1 GCAAAAG

                   
       1223 GCAAAAG
          1 GCAAAAG

       1230 TCCCAATTTC


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   21  1.00

ACGTcount: A:0.57, C:0.14, G:0.29, T:0.00


Consensus pattern (7 bp):   
GCAAAAG

Done.