Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01627.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 931

Length: 1553
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.33


Found at i:75 original size:26 final size:26

Alignment explanation


    Indices: 39--122  Score: 150
    Period size: 26  Copynumber: 3.2  Consensus size: 26

         29 TGATACAAAT

                                      
         39 TGATAATAGGTTAGGTAAATGTTCCA
          1 TGATAATAGGTTAGGTAAATGTTCCA

                                      
         65 TGATAATAGGTTAGGTAAATGTTCCA
          1 TGATAATAGGTTAGGTAAATGTTCCA

                   *               *  
         91 TGATAATGGGTTAGGTAAATGTTTCA
          1 TGATAATAGGTTAGGTAAATGTTCCA

                  
        117 TGATAA
          1 TGATAA

        123 GAATTTCATG


Statistics
Matches: 56,  Mismatches: 2, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  26   56  1.00

ACGTcount: A:0.35, C:0.06, G:0.24, T:0.36


Consensus pattern (26 bp):   
TGATAATAGGTTAGGTAAATGTTCCA
Done.