Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01628.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1842
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36


Found at i:1664 original size:20 final size:20

Alignment explanation


    Indices: 1628--1665  Score: 51
    Period size: 20  Copynumber: 1.9  Consensus size: 20

       1618 GTGATGGAGC

                     *          
       1628 AAGCATAAGTAATTTCATCA
          1 AAGCATAAGCAATTTCATCA

                               
       1648 AAGCA-AAGCAATCTTCAT
          1 AAGCATAAGCAAT-TTCAT

       1666 ATGTCGACCG


Statistics
Matches: 16,  Mismatches: 1, Indels: 2
        0.84            0.05        0.11

Matches are distributed among these distances:
  19    6  0.38
  20   10  0.62

ACGTcount: A:0.45, C:0.18, G:0.11, T:0.26


Consensus pattern (20 bp):   
AAGCATAAGCAATTTCATCA
Done.