Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01648.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 577

Length: 963
ACGTcount: A:0.32, C:0.12, G:0.25, T:0.30


Found at i:855 original size:30 final size:31

Alignment explanation


    Indices: 789--857  Score: 88
    Period size: 31  Copynumber: 2.3  Consensus size: 31

        779 ATGTTAATGG

                *                          
        789 GTGACTGATTTGTCACTTTTCGATAACGTTA
          1 GTGATTGATTTGTCACTTTTCGATAACGTTA

                         * *                
        820 GTGATTGATTTGTTATTTTTCGA-AA-GTTAA
          1 GTGATTGATTTGTCACTTTTCGATAACGTT-A

                    
        850 GTGATTGA
          1 GTGATTGA

        858 ATTGAAATCA


Statistics
Matches: 34,  Mismatches: 3, Indels: 3
        0.85            0.08        0.08

Matches are distributed among these distances:
  29    3  0.09
  30   11  0.32
  31   20  0.59

ACGTcount: A:0.25, C:0.09, G:0.22, T:0.45


Consensus pattern (31 bp):   
GTGATTGATTTGTCACTTTTCGATAACGTTA
Done.