Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01649.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4916
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.32


Found at i:4306 original size:21 final size:21

Alignment explanation


    Indices: 4280--4320  Score: 64
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       4270 AGACAAGCGA

                   * *           
       4280 TACTCCACAGCAGGTGGAGTG
          1 TACTCCAAAACAGGTGGAGTG

                                
       4301 TACTCCAAAACAGGTGGAGT
          1 TACTCCAAAACAGGTGGAGT

       4321 TTGAGCAGAT


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20


Consensus pattern (21 bp):   
TACTCCAAAACAGGTGGAGTG
Done.