Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01654.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1996
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.29


Found at i:1955 original size:24 final size:24

Alignment explanation


    Indices: 1923--1972  Score: 100
    Period size: 24  Copynumber: 2.1  Consensus size: 24

       1913 GTTTAAGATT

                                    
       1923 ACCTAATCCTTCCTATGTATAAAA
          1 ACCTAATCCTTCCTATGTATAAAA

                                    
       1947 ACCTAATCCTTCCTATGTATAAAA
          1 ACCTAATCCTTCCTATGTATAAAA

              
       1971 AC
          1 AC

       1973 TCAGGAGAAT


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   26  1.00

ACGTcount: A:0.38, C:0.26, G:0.04, T:0.32


Consensus pattern (24 bp):   
ACCTAATCCTTCCTATGTATAAAA
Done.