Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01678.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1827
ACGTcount: A:0.30, C:0.13, G:0.22, T:0.35


Found at i:920 original size:49 final size:48

Alignment explanation


    Indices: 846--990  Score: 197
    Period size: 46  Copynumber: 3.0  Consensus size: 48

        836 GCCGGAAACG

                                                             
        846 TTGCAGTTTGAGTCTAATCTTATTTGGG-CGGGGATGATTGTAAAACCC
          1 TTGCAGTTTGAGTCTAATCTTATTTGGGTC-GGGATGATTGTAAAACCC

                      *   *  *               *         *     
        894 TTGGCAGTTTAAGTGTACTCTTATTTGGGTC--TATGATTGTAGAACCC
          1 TT-GCAGTTTGAGTCTAATCTTATTTGGGTCGGGATGATTGTAAAACCC

               *                                            
        941 TTGTAGTTTGAGTCTAATCTTATTTGGGTCGGGATGATTGTAAAACCC
          1 TTGCAGTTTGAGTCTAATCTTATTTGGGTCGGGATGATTGTAAAACCC

              
        989 TT
          1 TT

        991 CCAAAGATGA


Statistics
Matches: 82,  Mismatches: 11, Indels: 8
        0.81            0.11        0.08

Matches are distributed among these distances:
  46   24  0.29
  47   16  0.20
  48   18  0.22
  49   23  0.28
  50    1  0.01

ACGTcount: A:0.22, C:0.14, G:0.25, T:0.39


Consensus pattern (48 bp):   
TTGCAGTTTGAGTCTAATCTTATTTGGGTCGGGATGATTGTAAAACCC

Done.