Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01701.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 259
ACGTcount: A:0.27, C:0.12, G:0.26, T:0.34


Found at i:17 original size:12 final size:12

Alignment explanation


    Indices: 1--34  Score: 50
    Period size: 12  Copynumber: 2.8  Consensus size: 12

                   *    
          1 GTGGAGGTGGAG
          1 GTGGAGGAGGAG

                        
         13 GTGGAGGAGGAG
          1 GTGGAGGAGGAG

                *     
         25 GTGGTGGAGG
          1 GTGGAGGAGG

         35 CAATGGTTCA


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  12   20  1.00

ACGTcount: A:0.18, C:0.00, G:0.68, T:0.15


Consensus pattern (12 bp):   
GTGGAGGAGGAG

Found at i:61 original size:18 final size:18

Alignment explanation


    Indices: 38--88  Score: 84
    Period size: 18  Copynumber: 2.8  Consensus size: 18

         28 GTGGAGGCAA

                              
         38 TGGTTCAGGTTATGGAAG
          1 TGGTTCAGGTTATGGAAG

                     *        
         56 TGGTTCAGGATATGGAAG
          1 TGGTTCAGGTTATGGAAG

               *           
         74 TGGGTCAGGTTATGG
          1 TGGTTCAGGTTATGG

         89 TAGTAGTGGA


Statistics
Matches: 30,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  18   30  1.00

ACGTcount: A:0.22, C:0.06, G:0.41, T:0.31


Consensus pattern (18 bp):   
TGGTTCAGGTTATGGAAG
Done.