Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00086.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1862
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32


Found at i:1259 original size:176 final size:172

Alignment explanation


    Indices: 930--1259  Score: 439
    Period size: 176  Copynumber: 1.9  Consensus size: 172

        920 TGTTGTTCTA

                                                                             
        930 TTTGCTTCTTTGATTTGATGTTGACCTTGTAGCTTCAAATTTGTCCACATTTATTATGTTTGCCA
          1 TTTGCTTCTTTGATTTGATGTTGACCTTGTAGCTTCAAATTTGTCCACATTTATTATGTTTGCCA

                    *      **          *   *              *             *    
        995 TATTCATTTCCTTGTTTTGGCTATGGTGCTTTGCTTGAATCTGAAACCCAGGTAAATCCGGAAGT
         66 TATTCATTCCCTTGTCCTGGCTATGGTCCTTCGCTTGAATCTGAAAACCAGGTAAATCCGAAAGT

              *                                       
       1060 ACTCAAATCCCAAGGCGTCATTATATCCATTGTTTGTTTGTG
        131 ACCCAAATCCCAAGGCGTCATTATATCCATTGTTTGTTTGTG

                        *               *       *                      *     
       1102 TTTGCTTCTTTGGTTTGATGTTGACCTTTTAGCTTCGAATTTGTCCACTGGACTTTATTGTGTTT
          1 TTTGCTTCTTTGATTTGATGTTGACCTTGTAGCTTCAAATTTGTCCAC---A-TTTATTATGTTT

            *         *                                                     *
       1167 TCCAT-TTACCTTCCCTTGTCCTGGCTATGGTCCTTCGCTTGAATCCT-AAAACCAGGTAAATCT
         62 GCCATATT-CATTCCCTTGTCCTGGCTATGGTCCTTCGCTTGAAT-CTGAAAACCAGGTAAATCC

            *                     *       
       1230 TAAAGTACCCAAATCCCAAGGCTTCATTAT
        125 GAAAGTACCCAAATCCCAAGGCGTCATTAT

       1260 GTTGTTGCAG


Statistics
Matches: 135,  Mismatches: 17, Indels: 8
        0.84            0.11        0.05

Matches are distributed among these distances:
 172   45  0.33
 175    3  0.02
 176   85  0.63
 177    2  0.01

ACGTcount: A:0.21, C:0.21, G:0.17, T:0.42


Consensus pattern (172 bp):   
TTTGCTTCTTTGATTTGATGTTGACCTTGTAGCTTCAAATTTGTCCACATTTATTATGTTTGCCA
TATTCATTCCCTTGTCCTGGCTATGGTCCTTCGCTTGAATCTGAAAACCAGGTAAATCCGAAAGT
ACCCAAATCCCAAGGCGTCATTATATCCATTGTTTGTTTGTG
Done.