Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01702.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1832
ACGTcount: A:0.33, C:0.12, G:0.23, T:0.33


Found at i:103 original size:26 final size:26

Alignment explanation


    Indices: 66--201  Score: 227
    Period size: 26  Copynumber: 5.2  Consensus size: 26

         56 TGATACAAAT

                   *               *  
         66 TGATAATAGGTTAGGTAAATGTTCCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                                      
         92 TGATAATGGGTTAGGTAAATGTTTCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                   **              *  
        118 TGATAATATGTTAGGTAAATGTTCCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                                      
        144 TGATAATGGGTTAGGTAAATGTTTCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                                      
        170 TGATAATGGGTTAGGTAAATGTTTCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                  
        196 TGATAA
          1 TGATAA

        202 GAATATCATG


Statistics
Matches: 102,  Mismatches: 8, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  26  102  1.00

ACGTcount: A:0.33, C:0.05, G:0.24, T:0.38


Consensus pattern (26 bp):   
TGATAATGGGTTAGGTAAATGTTTCA

Done.