Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01731.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4090
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27


Found at i:857 original size:123 final size:123

Alignment explanation


    Indices: 633--879  Score: 359
    Period size: 123  Copynumber: 2.0  Consensus size: 123

        623 AAAAGCTGTA

                    * *            *   *                                     
        633 GATATTGATGGAAGTGATGAAGATGATGTTAAAGATTTGAAGTCTCCTGTAAAGTCAGGTGGAAA
          1 GATATTGACGAAAGTGATGAAGAGGATATTAAAGATTTGAAGTCTCCTGTAAAGTCAGGTGGAAA

              *                           *      *                    
        698 GGTTCGTGGTGGCAGGGGTGCATCAAAAGGCCCAGCTGGCGGAAGAGGCAGAGGTGGT
         66 GGGTCGTGGTGGCAGGGGTGCATCAAAAGGACCAGCTAGCGGAAGAGGCAGAGGTGGT

                                                   *          *     *       *
        756 GATATTGACGAAAGTGATGAAGAGGATATTAAAGATTTGGAGTCTCCTGTGAAGTCTGGTGGAAG
          1 GATATTGACGAAAGTGATGAAGAGGATATTAAAGATTTGAAGTCTCCTGTAAAGTCAGGTGGAAA

                        *             *    *       *                  
        821 GGGTCGTGGTGGTAGGGGTGCATCAACAGGATCAGCTAGTGGAAGAGGCAGAGGTGGT
         66 GGGTCGTGGTGGCAGGGGTGCATCAAAAGGACCAGCTAGCGGAAGAGGCAGAGGTGGT

             
        879 G
          1 G

        880 GACGGGGTGG


Statistics
Matches: 109,  Mismatches: 15, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
 123  109  1.00

ACGTcount: A:0.28, C:0.11, G:0.38, T:0.23


Consensus pattern (123 bp):   
GATATTGACGAAAGTGATGAAGAGGATATTAAAGATTTGAAGTCTCCTGTAAAGTCAGGTGGAAA
GGGTCGTGGTGGCAGGGGTGCATCAAAAGGACCAGCTAGCGGAAGAGGCAGAGGTGGT
Done.