Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga04g01753.F2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2552
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Found at i:1361 original size:171 final size:171
Alignment explanation
Indices: 1076--1411 Score: 557
Period size: 171 Copynumber: 2.0 Consensus size: 171
1066 AGGGGGAACA
* *
1076 TATTTGCTTCTCCAAAGAATTACCCAAAACTCAATCCCATGATCCTGTCCCACCTTCACATGATG
1 TATTTGCTGCTCCAAAGAATTACCCAAAACTCAATCCCATGATCATGTCCCACCTTCACATGATG
* * * *
1141 GGATGGATCAGTTACAGGAATGTAATTGTAGTAGCTCCTTTTCTCCTGCTTCTCTAGATCCTCCA
66 AGATGGATCAGTTACAGGAATGTAATTGTAGCAGCTCCCTTTCTCCTGCTTCTCTAGATCCTACA
* * *
1206 TCCTCAGGTCAGAAGTTTGTATCTCCCATGGCAAAAGTTTG
131 TCCTCAGGTCAAAAGTTTGCATCTCCCATAGCAAAAGTTTG
* *
1247 TATTTGCTGCTCCAAAGAATTACCCAAAACTCAATCCCATGATCATGTGCCACCTTCACATGGTG
1 TATTTGCTGCTCCAAAGAATTACCCAAAACTCAATCCCATGATCATGTCCCACCTTCACATGATG
1312 AGATGGATCAGTTACAGG-ATCGTAATTGTAGCAGCTCCCTTTCTCCTGCTTCTCTAGATCCTAC
66 AGATGGATCAGTTACAGGAAT-GTAATTGTAGCAGCTCCCTTTCTCCTGCTTCTCTAGATCCTAC
1376 ATCCTCAGGTCAAAAGTTTGCATCTCCCATAGCAAA
130 ATCCTCAGGTCAAAAGTTTGCATCTCCCATAGCAAA
1412 GGAAAATCAT
Statistics
Matches: 153, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
170 2 0.01
171 151 0.99
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.31
Consensus pattern (171 bp):
TATTTGCTGCTCCAAAGAATTACCCAAAACTCAATCCCATGATCATGTCCCACCTTCACATGATG
AGATGGATCAGTTACAGGAATGTAATTGTAGCAGCTCCCTTTCTCCTGCTTCTCTAGATCCTACA
TCCTCAGGTCAAAAGTTTGCATCTCCCATAGCAAAAGTTTG
Done.