Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01758.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3973
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30


Found at i:3961 original size:13 final size:13

Alignment explanation


    Indices: 3943--3970  Score: 56
    Period size: 13  Copynumber: 2.2  Consensus size: 13

       3933 TATAATCATT

                         
       3943 TTATTATTAATAA
          1 TTATTATTAATAA

                         
       3956 TTATTATTAATAA
          1 TTATTATTAATAA

              
       3969 TT
          1 TT

       3971 TCT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   15  1.00

ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57


Consensus pattern (13 bp):   
TTATTATTAATAA
Done.