Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01764.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 430

Length: 718
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.35


Found at i:649 original size:19 final size:19

Alignment explanation


    Indices: 625--683  Score: 81
    Period size: 19  Copynumber: 3.3  Consensus size: 19

        615 GGATTTGATG

                               
        625 TTTTTGTAATTTTTGGACT
          1 TTTTTGTAATTTTTGGACT

                               
        644 TTTTTGTAATTTTT-G---
          1 TTTTTGTAATTTTTGGACT

                      *        
        659 TTTTTGTAATATTTGGACT
          1 TTTTTGTAATTTTTGGACT

                  
        678 TTTTTG
          1 TTTTTG

        684 GATTTTTACG


Statistics
Matches: 35,  Mismatches: 1, Indels: 8
        0.80            0.02        0.18

Matches are distributed among these distances:
  15   13  0.37
  16    1  0.03
  18    1  0.03
  19   20  0.57

ACGTcount: A:0.15, C:0.03, G:0.15, T:0.66


Consensus pattern (19 bp):   
TTTTTGTAATTTTTGGACT
Done.