Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01767.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5348
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28


Found at i:236 original size:18 final size:18

Alignment explanation


    Indices: 212--256  Score: 65
    Period size: 18  Copynumber: 2.5  Consensus size: 18

        202 GCGATTACAC

                               
        212 GGATGATGAAGG-AGATGA
          1 GGATGATGAAGGAAGA-GA

            *                 
        230 TGATGATGAAGGAAGAGA
          1 GGATGATGAAGGAAGAGA

                     
        248 GGATGATGA
          1 GGATGATGA

        257 TGAAAATGGG


Statistics
Matches: 24,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
  18   21  0.88
  19    3  0.12

ACGTcount: A:0.40, C:0.00, G:0.42, T:0.18


Consensus pattern (18 bp):   
GGATGATGAAGGAAGAGA

Found at i:5098 original size:2 final size:2

Alignment explanation


    Indices: 5091--5127  Score: 74
    Period size: 2  Copynumber: 18.5  Consensus size: 2

       5081 GTTAATAATT

                                                                   
       5091 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
          1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A

       5128 ATGAGAAGGA


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   35  1.00

ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00


Consensus pattern (2 bp):   
AG

Done.