Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01786.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 265

Length: 442
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.36


Found at i:151 original size:24 final size:21

Alignment explanation


    Indices: 86--160  Score: 132
    Period size: 21  Copynumber: 3.6  Consensus size: 21

         76 TCCAGTCATG

                                 
         86 GCTCCACCTCCACAATATGCT
          1 GCTCCACCTCCACAATATGCT

                                 
        107 GCTCCACCTCCACAATATGCT
          1 GCTCCACCTCCACAATATGCT

                       *  *      
        128 GCTCCACCTCCGCAGTATGCT
          1 GCTCCACCTCCACAATATGCT

                        
        149 GCTCCACCTCCA
          1 GCTCCACCTCCA

        161 AGACCTGGTT


Statistics
Matches: 51,  Mismatches: 3, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  21   51  1.00

ACGTcount: A:0.20, C:0.45, G:0.12, T:0.23


Consensus pattern (21 bp):   
GCTCCACCTCCACAATATGCT
Done.