Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01787.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 583

Length: 973
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.32


Found at i:76 original size:9 final size:9

Alignment explanation


    Indices: 62--86  Score: 50
    Period size: 9  Copynumber: 2.8  Consensus size: 9

         52 AAGATTCCGT

                     
         62 CTTCTTCTC
          1 CTTCTTCTC

                     
         71 CTTCTTCTC
          1 CTTCTTCTC

                   
         80 CTTCTTC
          1 CTTCTTC

         87 AGCTCTTATA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.00, C:0.44, G:0.00, T:0.56


Consensus pattern (9 bp):   
CTTCTTCTC

Found at i:830 original size:6 final size:6

Alignment explanation


    Indices: 819--854  Score: 72
    Period size: 6  Copynumber: 6.0  Consensus size: 6

        809 ATATCTAATG

                                                     
        819 TAGCCA TAGCCA TAGCCA TAGCCA TAGCCA TAGCCA
          1 TAGCCA TAGCCA TAGCCA TAGCCA TAGCCA TAGCCA

        855 AAGGCATTGT


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   30  1.00

ACGTcount: A:0.33, C:0.33, G:0.17, T:0.17


Consensus pattern (6 bp):   
TAGCCA

Done.