Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01788.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 279

Length: 466
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.36


Found at i:95 original size:21 final size:21

Alignment explanation


    Indices: 70--139  Score: 104
    Period size: 21  Copynumber: 3.3  Consensus size: 21

         60 AGTGATGGCA

                       *         
         70 CCACCTCCACATTATGCTGCT
          1 CCACCTCCACAGTATGCTGCT

            *                    
         91 GCACCTCCACAGTATGCTGCT
          1 CCACCTCCACAGTATGCTGCT

                        *        
        112 CCACCTCCACAGAATGCTGCT
          1 CCACCTCCACAGTATGCTGCT

              *    
        133 CCGCCTC
          1 CCACCTC

        140 TAAGGCCTGG


Statistics
Matches: 44,  Mismatches: 5, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  21   44  1.00

ACGTcount: A:0.19, C:0.44, G:0.14, T:0.23


Consensus pattern (21 bp):   
CCACCTCCACAGTATGCTGCT

Done.