Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01791.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 662

Length: 1104
ACGTcount: A:0.38, C:0.12, G:0.23, T:0.27


Found at i:347 original size:23 final size:23

Alignment explanation


    Indices: 321--368  Score: 87
    Period size: 23  Copynumber: 2.1  Consensus size: 23

        311 TACTTTGAAA

                                   
        321 AGTTTGGTTTGTTTTCTAACACG
          1 AGTTTGGTTTGTTTTCTAACACG

                           *       
        344 AGTTTGGTTTGTTTTGTAACACG
          1 AGTTTGGTTTGTTTTCTAACACG

              
        367 AG
          1 AG

        369 GAACTAGCCA


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  23   24  1.00

ACGTcount: A:0.19, C:0.10, G:0.25, T:0.46


Consensus pattern (23 bp):   
AGTTTGGTTTGTTTTCTAACACG
Done.