Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01800.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1961
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.31


Found at i:1842 original size:20 final size:21

Alignment explanation


    Indices: 1798--1842  Score: 58
    Period size: 20  Copynumber: 2.2  Consensus size: 21

       1788 CCTTCTCGTA

                                 
       1798 TCTTTAATTTTGTTTTTACAC
          1 TCTTTAATTTTGTTTTTACAC

                  *            * 
       1819 -CTTTACTTTTGTTTTT-CTC
          1 TCTTTAATTTTGTTTTTACAC

                 
       1838 TCTTT
          1 TCTTT

       1843 TGGACTAATA


Statistics
Matches: 21,  Mismatches: 2, Indels: 3
        0.81            0.08        0.12

Matches are distributed among these distances:
  19    2  0.10
  20   19  0.90

ACGTcount: A:0.11, C:0.18, G:0.04, T:0.67


Consensus pattern (21 bp):   
TCTTTAATTTTGTTTTTACAC
Done.