Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01801.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2097
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30


Found at i:67 original size:2 final size:2

Alignment explanation


    Indices: 55--84  Score: 51
    Period size: 2  Copynumber: 15.0  Consensus size: 2

         45 AAAAGAGGGT

                     *                                  
         55 GA GA GA AA GA GA GA GA GA GA GA GA GA GA GA
          1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA

         85 TGATGGGCAA


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   2   26  1.00

ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00


Consensus pattern (2 bp):   
GA

Found at i:1503 original size:25 final size:25

Alignment explanation


    Indices: 1473--1522  Score: 91
    Period size: 25  Copynumber: 2.0  Consensus size: 25

       1463 AAAAATGAGA

                            *        
       1473 TTATTTTCTAAATATGGGTTGTAGG
          1 TTATTTTCTAAATATGAGTTGTAGG

                                     
       1498 TTATTTTCTAAATATGAGTTGTAGG
          1 TTATTTTCTAAATATGAGTTGTAGG

       1523 AGTTCATCTA


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  25   24  1.00

ACGTcount: A:0.26, C:0.04, G:0.22, T:0.48


Consensus pattern (25 bp):   
TTATTTTCTAAATATGAGTTGTAGG

Done.