Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01806.N15

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5010
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32


Found at i:1529 original size:23 final size:23

Alignment explanation


    Indices: 1499--1545  Score: 94
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       1489 CCCAAGTACC

                                   
       1499 TATTGTTGTTGCTTTTCTTTTGG
          1 TATTGTTGTTGCTTTTCTTTTGG

                                   
       1522 TATTGTTGTTGCTTTTCTTTTGG
          1 TATTGTTGTTGCTTTTCTTTTGG

             
       1545 T
          1 T

       1546 CCTATAAGGT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   24  1.00

ACGTcount: A:0.04, C:0.09, G:0.21, T:0.66


Consensus pattern (23 bp):   
TATTGTTGTTGCTTTTCTTTTGG
Done.